============================================= AUTO ============================================= MIGRATION RATE AND POPULATION SIZE ESTIMATION using Markov Chain Monte Carlo simulation ============================================= Version 2.1.8 Program started at Fri Aug 25 19:52:32 2006 Options in use: --------------- Datatype: Microsatellite data [Stepwise mutation] Missing data is not included Pseudo-random number generator: Least Congruental Generator Random number seed (with internal timer) 1156549953 Start parameters: First genealogy was started using a random tree Theta values were generated from an FST-calculation M values were generated from the FST-calculation Migration model: Migration matrix model with variable Theta Mutation rate is constant for all loci Analysis strategy is Bayesian Prior distribution used: Parameter group Prior type Minimum Mean(*) Maximum Delta ---------------------- ------------ ---------- ---------- ---------- ---------- Population size (Theta) Exponential 0.000000 1.000000 10.000000 - Migration rate (M) Exponential 0.000000 10.000000 1000.00000 - Markov chain settings: Long chains (long-chains): 1 Steps sampled (inc*samples*rep): 6400 Steps recorded (sample*rep): 3200 Combining over replicates: 2 Static heating scheme 4 chains with temperatures 1.00, 2.33, 3.67, 5.00 Swapping interval is 1 Number of discard trees per chain: 130 Print options: Data file: infile.msat Output file (ASCII text): outfile-bayes Output file (PDF): outfile.pdf Posterior distribution: bayesfile Print data: No Print genealogies: No Plot data: No Profile likelihood: Yes, tables and summary Percentile method with df=1 and for Theta and M=m/mu Summary of data: --------------- Datatype: Microsatellite data Number of loci: 10 Population Locus Gene copies data (missing) ---------------------------------------------------------------- 1 population__number___0 1 50 (0) 2 50 (0) 3 50 (0) 4 50 (0) 5 50 (0) 6 50 (0) 7 50 (0) 8 50 (0) 9 50 (0) 10 50 (0) 2 population__number___1 1 42 (0) 2 42 (0) 3 42 (0) 4 42 (0) 5 42 (0) 6 42 (0) 7 42 (0) 8 42 (0) 9 42 (0) 10 42 (0) Total of all populations 1 92 (0) 2 92 (0) 3 92 (0) 4 92 (0) 5 92 (0) 6 92 (0) 7 92 (0) 8 92 (0) 9 92 (0) 10 92 (0)