/* * Open BEAGLE * Copyright (C) 2001-2005 by Christian Gagne and Marc Parizeau * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public * License as published by the Free Software Foundation; either * version 2.1 of the License, or (at your option) any later version. * * This library is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with this library; if not, write to the Free Software * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA * * Contact: * Laboratoire de Vision et Systemes Numeriques * Departement de genie electrique et de genie informatique * Universite Laval, Quebec, Canada, G1K 7P4 * http://vision.gel.ulaval.ca * */ /*! * \file beagle/GA/src/MutationGaussianFltVecOp.cpp * \brief Source code of class GA::MutationGaussianFltVecOp. * \author Christian Gagne * \author Marc Parizeau * $Revision: 1.19 $ * $Date: 2005/10/04 16:25:09 $ */ #include "beagle/GA.hpp" #include #include // To get FLT_MAX on Borland C++ Builder #include #include #include using namespace std; using namespace Beagle; /*! * \brief Construct a real-valued GA Gaussian mutation operator. * \param inMutationPbName Gaussian mutation probability parameter name used in register. * \param inMutateFloatPbName Single value Gaussian mutation probability name used in the register. * \param inMutateGaussMuName Gaussian mutation mean value parameter name used in register. * \param inMutateGaussSigmaName Gaussian mutation std deviation parameter name used in register. * \param inName Name of the operator. */ GA::MutationGaussianFltVecOp::MutationGaussianFltVecOp(Beagle::string inMutationPbName, Beagle::string inMutateFloatPbName, Beagle::string inMutateGaussMuName, Beagle::string inMutateGaussSigmaName, Beagle::string inName) : MutationOp(inMutationPbName, inName), mMutateFloatPbName(inMutateFloatPbName), mMutateGaussMuName(inMutateGaussMuName), mMutateGaussSigmaName(inMutateGaussSigmaName) { } /*! * \brief Initialize the real-valued GA Gaussian mutation operator. * \param ioSystem System of the evolution. */ void GA::MutationGaussianFltVecOp::initialize(System& ioSystem) { Beagle_StackTraceBeginM(); MutationOp::initialize(ioSystem); if(ioSystem.getRegister().isRegistered(mMutationPbName)) { ioSystem.getRegister().deleteEntry(mMutationPbName); } if(ioSystem.getRegister().isRegistered(mMutationPbName)) { mMutationProba = castHandleT(ioSystem.getRegister()[mMutationPbName]); } else { mMutationProba = new Float(1.0f); Register::Description lDescription( "Indiv. Gaussian mutation prob.", "Float", "1.0", "Gaussian mutation probability for each real-valued GA individual." ); ioSystem.getRegister().addEntry(mMutationPbName, mMutationProba, lDescription); } if(ioSystem.getRegister().isRegistered(mMutateFloatPbName)) { mMutateFloatPb = castHandleT(ioSystem.getRegister()[mMutateFloatPbName]); } else { mMutateFloatPb = new Float(0.1f); Register::Description lDescription( "Value's Gaussian mutation prob.", "Float", "0.1", "Single value Gaussian mutation probability for the real-valued GA individual." ); ioSystem.getRegister().addEntry(mMutateFloatPbName, mMutateFloatPb, lDescription); } if(ioSystem.getRegister().isRegistered(mMutateGaussMuName)) { mMutateGaussMu = castHandleT(ioSystem.getRegister()[mMutateGaussMuName]); } else { mMutateGaussMu = new DoubleArray(1,0.0); std::ostringstream lOSS; lOSS << "Mean of values added to real-values vector numbers at each Gaussian mutation. "; lOSS << "Value can be a scalar, which state the mu value for all float "; lOSS << "vector parameters, or a vector which state the mu for the parameters "; lOSS << "individually. If the mu vector size is smaller than the "; lOSS << "float vector size, the mu used for the last values of the float vector "; lOSS << "is equal to the last value of the mu vector."; Register::Description lDescription( "Gaussian mutation mean", "DoubleArray", "0.0", lOSS.str().c_str() ); ioSystem.getRegister().addEntry(mMutateGaussMuName, mMutateGaussMu, lDescription); } if(ioSystem.getRegister().isRegistered(mMutateGaussSigmaName)) { mMutateGaussSigma = castHandleT(ioSystem.getRegister()[mMutateGaussSigmaName]); } else { mMutateGaussSigma = new DoubleArray(1,0.1); std::ostringstream lOSS; lOSS << "Standard deviation of values added to real-values vector numbers at "; lOSS << "each Gaussian mutation. Value can be a scalar, which state the sigma for "; lOSS << "all float vector parameters, or a vector which state the sigma "; lOSS << "for the parameters individually. If the sigma vector size is smaller than the "; lOSS << "float vector size, the sigma used for the last values of the "; lOSS << "float vector is equal to the last value of the sigma vector."; Register::Description lDescription( "Gaussian mutation std deviation", "DoubleArray", "0.1", lOSS.str().c_str() ); ioSystem.getRegister().addEntry(mMutateGaussSigmaName, mMutateGaussSigma, lDescription); } if(ioSystem.getRegister().isRegistered("ga.float.maxvalue")) { mMaxValue = castHandleT(ioSystem.getRegister()["ga.float.maxvalue"]); } else { mMaxValue = new DoubleArray(1,DBL_MAX); std::ostringstream lOSS; lOSS << "Maximum values assigned to vector's floats. "; lOSS << "Value can be a scalar, which limit the value for all float "; lOSS << "vector parameters, or a vector which limit the value for the parameters "; lOSS << "individually. If the maximum value is smaller than the "; lOSS << "float vector size, the limit used for the last values of the float vector "; lOSS << "is equal to the last value of the maximum value vector."; Register::Description lDescription( "Maximum vector values", "DoubleArray", dbl2str(DBL_MAX), lOSS.str().c_str() ); ioSystem.getRegister().addEntry("ga.float.maxvalue", mMaxValue, lDescription); } if(ioSystem.getRegister().isRegistered("ga.float.minvalue")) { mMinValue = castHandleT(ioSystem.getRegister()["ga.float.minvalue"]); } else { mMinValue = new DoubleArray(1,DBL_MIN); std::ostringstream lOSS; lOSS << "Minimum values assigned to vector's floats. "; lOSS << "Value can be a scalar, which limit the value for all float "; lOSS << "vector parameters, or a vector which limit the value for the parameters "; lOSS << "individually. If the minimum value is smaller than the "; lOSS << "float vector size, the limit used for the last values of the float vector "; lOSS << "is equal to the last value of the minimum value vector."; Register::Description lDescription( "Minimum values", "DoubleArray", dbl2str(DBL_MIN), lOSS.str().c_str() ); ioSystem.getRegister().addEntry("ga.float.minvalue", mMinValue, lDescription); } if(ioSystem.getRegister().isRegistered("ga.float.inc")) { mIncValue = castHandleT(ioSystem.getRegister()["ga.float.inc"]); } else { mIncValue = new DoubleArray(1,0.0); std::ostringstream lOSS; lOSS << "Increments of valid values assigned to vector's floats. "; lOSS << "Value can be a scalar, which limit the value for all float "; lOSS << "vector parameters, or a vector which limit the value for the parameters "; lOSS << "individually. If the value is not evenly divisible by the "; lOSS << "increment, the value will be set to the closest valid "; lOSS << "value."; Register::Description lDescription( "Increments of valid values", "DoubleArray", "0.0", lOSS.str().c_str() ); ioSystem.getRegister().addEntry("ga.float.inc", mIncValue, lDescription); } Beagle_StackTraceEndM("void GA::MutationGaussianFltVecOp::initialize(System& ioSystem)"); } /*! * \brief Gaussian mutate a real-valued GA individual. * \param ioIndividual Real-valued GA individual to mutate. * \param ioContext Context of the evolution. * \return True if the individual is effectively mutated, false if not. */ bool GA::MutationGaussianFltVecOp::mutate(Beagle::Individual& ioIndividual, Context& ioContext) { Beagle_StackTraceBeginM(); bool lMutated = false; Beagle_LogVerboseM( ioContext.getSystem().getLogger(), "mutation", "Beagle::GA::MutationGaussianFltVecOp", string("Gaussian mutations with mean of ")+ mMutateGaussMu->serialize()+ string(", and standard deviation of ")+ mMutateGaussSigma->serialize() ); for(unsigned int i=0; i(ioIndividual[i]); Beagle_LogVerboseM( ioContext.getSystem().getLogger(), "mutation", "Beagle::GA::MutationGaussianFltVecOp", string("Gaussian mutation the ")+uint2ordinal(i+1)+" float vector" ); Beagle_LogDebugM( ioContext.getSystem().getLogger(), "mutation", "Beagle::GA::MutationGaussianFltVecOp", string("The float vector before GA Gaussian mutation: ")+lVector->serialize() ); for(unsigned int j=0; jsize(); j++) { const float lRolledPb = ioContext.getSystem().getRandomizer().rollUniform(); if(lRolledPb <= mMutateFloatPb->getWrappedValue()) { const double lMaxVal = jsize() ? (*mMaxValue)[j] : mMaxValue->back(); const double lMinVal = jsize() ? (*mMinValue)[j] : mMinValue->back(); const double lIncVal = jsize() ? (*mIncValue)[j] : mIncValue->back(); const double lMu = jsize() ? (*mMutateGaussMu)[j] : mMutateGaussMu->back(); const double lSigma = jsize() ? (*mMutateGaussSigma)[j] : mMutateGaussSigma->back(); Beagle_AssertM(lSigma>=0.0); const double lMValue = ioContext.getSystem().getRandomizer().rollGaussian(lMu,lSigma); (*lVector)[j] += lMValue; if(lIncVal!=0.0) (*lVector)[j] = lIncVal * round((*lVector)[j] / lIncVal); if((*lVector)[j] > lMaxVal) (*lVector)[j] = lMaxVal; if((*lVector)[j] < lMinVal) (*lVector)[j] = lMinVal; lMutated = true; Beagle_LogDebugM( ioContext.getSystem().getLogger(), "mutation", "Beagle::GA::MutationGaussianFltVecOp", string("Gaussian mutating by adding ")+dbl2str(lMValue)+ string(" to the value at the index ")+uint2str(j)+ string(" of the float vector") ); } } if(lMutated) { Beagle_LogVerboseM( ioContext.getSystem().getLogger(), "mutation", "Beagle::GA::MutationGaussianFltVecOp", string("The float vector has been mutated") ); Beagle_LogDebugM( ioContext.getSystem().getLogger(), "mutation", "Beagle::GA::MutationGaussianFltVecOp", string("The float vector after GA Gaussian mutation: ")+lVector->serialize() ); } else { Beagle_LogVerboseM( ioContext.getSystem().getLogger(), "mutation", "Beagle::GA::MutationGaussianFltVecOp", string("The float vector has not been mutated") ); } } return lMutated; Beagle_StackTraceEndM("bool GA::MutationGaussianFltVecOp::mutate(Beagle::Individual& ioIndividual, Context& ioContext)"); } /*! * \brief Read a Gaussian mutation operator from a XML subtree. * \param inIter XML iterator to use to read mutation operator. * \param inOpMap Operator map to use to read mutation operator. */ void GA::MutationGaussianFltVecOp::readWithMap(PACC::XML::ConstIterator inIter, OperatorMap& inOpMap) { Beagle_StackTraceBeginM(); if((inIter->getType()!=PACC::XML::eData) || (inIter->getValue()!=getName().c_str())) { std::ostringstream lOSS; lOSS << "tag <" << getName() << "> expected!" << std::flush; throw Beagle_IOExceptionNodeM(*inIter, lOSS.str().c_str()); } string lMutationPbReadName = inIter->getAttribute("mutationpb").c_str(); if(lMutationPbReadName.empty() == false) mMutationPbName = lMutationPbReadName; string lMutateFloatPbReadName = inIter->getAttribute("mutfloatpb").c_str(); if(lMutateFloatPbReadName.empty() == false) mMutateFloatPbName = lMutateFloatPbReadName; string lMutateGaussMuReadName = inIter->getAttribute("mutgaussmu").c_str(); if(lMutateGaussMuReadName.empty() == false) mMutateGaussMuName = lMutateGaussMuReadName; string lMutateGaussSigmaReadName = inIter->getAttribute("mutgausssigma").c_str(); if(lMutateGaussSigmaReadName.empty() == false) mMutateGaussSigmaName = lMutateGaussSigmaReadName; Beagle_StackTraceEndM("void GA::MutationGaussianFltVecOp::readWithMap(PACC::XML::ConstIterator inIter, OperatorMap& inOpMap)"); } /*! * \brief Write Gaussian mutation operator into XML streamer. * \param ioStreamer XML streamer to write mutation operator into. * \param inIndent Whether XML output should be indented. */ void GA::MutationGaussianFltVecOp::writeContent(PACC::XML::Streamer& ioStreamer, bool inIndent) const { Beagle_StackTraceBeginM(); Beagle::MutationOp::writeContent(ioStreamer, inIndent); ioStreamer.insertAttribute("mutfloatpb", mMutateFloatPbName); ioStreamer.insertAttribute("mutgaussmu", mMutateGaussMuName); ioStreamer.insertAttribute("mutgausssigma", mMutateGaussSigmaName); Beagle_StackTraceEndM("void GA::MutationGaussianFltVecOp::writeContent(PACC::XML::Streamer& ioStreamer, bool inIndent) const"); }