/* * Open BEAGLE * Copyright (C) 2001-2005 by Christian Gagne and Marc Parizeau * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public * License as published by the Free Software Foundation; either * version 2.1 of the License, or (at your option) any later version. * * This library is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with this library; if not, write to the Free Software * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA * * Contact: * Laboratoire de Vision et Systemes Numeriques * Departement de genie electrique et de genie informatique * Universite Laval, Quebec, Canada, G1K 7P4 * http://vision.gel.ulaval.ca * */ /*! * \file beagle/GP/src/Individual.cpp * \brief Source code of class GP::Individual. * \author Christian Gagne * \author Marc Parizeau * $Revision: 1.20 $ * $Date: 2005/09/30 15:04:53 $ */ #include "beagle/GP.hpp" #include "beagle/RouletteT.hpp" using namespace Beagle; /*! * \brief Contruct a GP individual. * \par Note: * Use GP::Tree allocator to allocate the genotypes. */ GP::Individual::Individual() : Beagle::Individual(new GP::Tree::Alloc) { } /*! * \brief Contruct a GP individual from a GP tree allocator. * \param inGenotypeAlloc Allocator of GP trees. */ GP::Individual::Individual(GP::Tree::Alloc::Handle inGenotypeAlloc) : Beagle::Individual(inGenotypeAlloc) { } /*! * \brief Contruct a GP individual from a genotype allocator and a fitness allocator. * \param inGenotypeAlloc Allocator of GP trees. * \param inFitnessAlloc Fitness allocator. * \param inN Number of genotypes of the GP individual. */ GP::Individual::Individual(GP::Tree::Alloc::Handle inGenotypeAlloc, Fitness::Alloc::Handle inFitnessAlloc, size_type inN) : Beagle::Individual(inGenotypeAlloc, inFitnessAlloc, inN) { } /*! * \brief Randomly select a tree from the individual. The * selection is biased towards trees with a greater number of nodes * (i.e. Each node has an equal probability of being selected. * \return Randomly selected tree */ unsigned int GP::Individual::chooseRandomTree(Beagle::Context& ioContext) const { Beagle_StackTraceBeginM(); unsigned int lChosenNode = ioContext.getSystem().getRandomizer().rollInteger(0, getTotalNodes()-1); unsigned int lChosenTree = 0; for(; (lChosenTree+1)size()) break; else lChosenNode -= (*this)[lChosenTree]->size(); } return lChosenTree; Beagle_StackTraceEndM("unsigned int GP::Individual::chooseRandomTree(Beagle::Context& ioContext) const"); } /*! * \brief Randomly select a node from a specific tree in the * individual. Each node has an equal probability of being selected. * \return Randomly selected tree */ unsigned int GP::Individual::chooseRandomNode(unsigned int inTree, Beagle::Context& ioContext) const { Beagle_StackTraceBeginM(); Beagle_AssertM(operator[](inTree)->size()!=0); return ioContext.getSystem().getRandomizer().rollInteger(0, operator[](inTree)->size()-1); Beagle_StackTraceEndM("unsigned int GP::Individual::chooseRandomNode(unsigned int inTree, Beagle::Context& ioContext) const"); } /*! * \brief Randomly select a node that takes arguments from a specific * tree in the individual. * \return Randomly selected tree */ unsigned int GP::Individual::chooseRandomNodeWithArgs(unsigned int inTree, Beagle::Context& ioContext) const { Beagle_StackTraceBeginM(); const GP::Tree& lTree = *(operator[](inTree)); unsigned int lSize = lTree.size(); if (lSize < 2) { throw Beagle_RunTimeExceptionM(string("In GP::Individual::chooseRandomNodeWithArgs(): ")+ string("Could not choose a node with arguments because the specified tree has fewer ")+ string("than two (")+uint2str(lSize)+string(") nodes, hence there are no such nodes")+ string(" in the tree. This occurred while calling chooseRandomNodeWithArgs() with an ")+ string("inTree value of ")+uint2str(inTree)); } // Loop through the tree adding appropriate nodes into the roulette RouletteT lRoulette; for (unsigned int i=0; i 1) lRoulette.insert(i); } // Select node with roulette Beagle_AssertM(!lRoulette.empty()); return lRoulette.select(ioContext.getSystem().getRandomizer()); Beagle_StackTraceEndM("unsigned int GP::Individual::chooseRandomNodeWithArgs(unsigned int inTree, Beagle::Context& ioContext) const"); } /*! * \brief Randomly select a node that takes no argument from a specific * tree in the individual. * \return Randomly selected tree */ unsigned int GP::Individual::chooseRandomNodeWithoutArgs(unsigned int inTree, Beagle::Context& ioContext) const { Beagle_StackTraceBeginM(); // Loop through the tree adding appropriate nodes into the roulette unsigned int lSize = operator[](inTree)->size(); RouletteT lRoulette; for (unsigned int i=0; ioperator[](i).mSubTreeSize == 1) { lRoulette.insert(i); } } // Select node with roulette Beagle_AssertM(!lRoulette.empty()); return lRoulette.select(ioContext.getSystem().getRandomizer()); Beagle_StackTraceEndM("unsigned int GP::Individual::chooseRandomNodeWithoutArgs(unsigned int inTree, Beagle::Context& ioContext) const"); } /*! * \brief Interpret the GP individual. * \param outResult Datum containing the result of the interpretation. * \param ioContext GP evolutionary context. * \throw Beagle::ObjectException When individual or tree are empty. * \throw Beagle::AssertException When context is not correctly set. * \throw Beagle::GP::MaxNodesExecutionException If number of nodes execution is more than allowed. * \throw Beagle::GP::MaxTimeExecutionException If elapsed execution time is more than allowed. */ void GP::Individual::run(GP::Datum& outResult, GP::Context& ioContext) { Beagle_StackTraceBeginM(); if(&ioContext.getIndividual() != this) { throw Beagle_RunTimeExceptionM(string("In GP::Individual::run(): For the given context, ")+ string("getIndividual() did not return the same individual as was passed to this (run) ")+ string("method. Consider setting the context's individual to be the same by using the ")+ string("method Context::setIndividualHandle().")); } if(empty()) throw Beagle_ObjectExceptionM("Could not interpret, individual has no trees!"); if((*this)[0]->empty()) throw Beagle_ObjectExceptionM("Could not interpret, 1st tree is empty!"); Tree::Handle lOldTreeHandle = ioContext.getGenotypeHandle(); unsigned int lOldTreeIndex = ioContext.getGenotypeIndex(); ioContext.setGenotypeIndex(0); ioContext.setGenotypeHandle((*this)[0]); Beagle_LogVerboseM( ioContext.getSystem().getLogger(), "individual", "Beagle::GP::Individual", string("Running the ")+uint2ordinal(ioContext.getIndividualIndex()+1)+ string(" individual") ); Beagle_LogDebugM( ioContext.getSystem().getLogger(), "individual", "Beagle::GP::Individual", string("The individual is: ")+serialize() ); Beagle_LogDebugM( ioContext.getSystem().getLogger(), "individual", "Beagle::GP::Individual", string("Executing the first tree root node \"")+ (*(*this)[0])[0].mPrimitive->getName()+"\"" ); ioContext.setNodesExecutionCount(0); ioContext.incrementNodesExecuted(); ioContext.getExecutionTimer().reset(); ioContext.pushCallStack(0); (*(*this)[0])[0].mPrimitive->execute(outResult, ioContext); ioContext.popCallStack(); ioContext.checkExecutionTime(); Beagle_LogDebugM( ioContext.getSystem().getLogger(), "individual", "Beagle::GP::Individual", string("Result of executing the ")+uint2ordinal(ioContext.getIndividualIndex()+1)+ string(" individual: ")+outResult.serialize() ); ioContext.setGenotypeIndex(lOldTreeIndex); ioContext.setGenotypeHandle(lOldTreeHandle); Beagle_StackTraceEndM("void GP::Individual::run(GP::Datum& outResult, GP::Context& ioContext)"); } /*! * \brief Validate the GP individual. * \param ioContext Evolutionary context. * \return True if the GP individual is valid, false if not. */ bool GP::Individual::validate(GP::Context& ioContext) { Beagle_StackTraceBeginM(); bool lResult = true; Beagle_LogDetailedM( ioContext.getSystem().getLogger(), "individual", "Beagle::GP::Individual", string("Validating ")+uint2ordinal(ioContext.getIndividualIndex()+1)+ string(" individual") ); // Store original values. GP::Tree::Handle lOldTreeHandle = ioContext.getGenotypeHandle(); unsigned int lOldTreeIndex = ioContext.getGenotypeIndex(); // Loop through each of the trees in the individual for (unsigned int i=0; isetContextToNode(0, ioContext); if(!lTree->validateSubTree(0, ioContext)) { Beagle_LogVerboseM( ioContext.getSystem().getLogger(), "individual", "Beagle::GP::Individual", string("Validation of ")+uint2ordinal(i+1)+string(" tree failed.") ); lResult = false; break; } } if(lResult) { Beagle_LogVerboseM( ioContext.getSystem().getLogger(), "individual", "Beagle::GP::Individual", string("Individual passed validation testing.") ); } // Restore the original values. ioContext.setGenotypeHandle(lOldTreeHandle); ioContext.setGenotypeIndex(lOldTreeIndex); return lResult; Beagle_StackTraceEndM("bool GP::Individual::validate(GP::Context& ioContext)"); }