/* * Open BEAGLE * Copyright (C) 2001-2005 by Christian Gagne and Marc Parizeau * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public * License as published by the Free Software Foundation; either * version 2.1 of the License, or (at your option) any later version. * * This library is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with this library; if not, write to the Free Software * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA * * Contact: * Laboratoire de Vision et Systemes Numeriques * Departement de genie electrique et de genie informatique * Universite Laval, Quebec, Canada, G1K 7P4 * http://vision.gel.ulaval.ca * */ /*! * \file beagle/GP/src/MutationShrinkOp.cpp * \brief Source code of class GP::MutationShrinkOp. * \author Christian Gagne * \author Marc Parizeau * $Revision: 1.11 $ * $Date: 2005/10/04 16:25:10 $ */ #include "beagle/GP.hpp" #include #include using namespace Beagle; /*! * \brief Construct a GP shrink mutation operator. * \param inMutationPbName Mutation shrink probability. * \param inName Name of the operator. */ GP::MutationShrinkOp::MutationShrinkOp(Beagle::string inMutationPbName, Beagle::string inName) : Beagle::MutationOp(inMutationPbName, inName) { } /*! * \brief Initialize the GP shrink mutation operator. * \param ioSystem System of the evolution. */ void GP::MutationShrinkOp::initialize(Beagle::System& ioSystem) { Beagle_StackTraceBeginM(); Beagle::MutationOp::initialize(ioSystem); if(ioSystem.getRegister().isRegistered(mMutationPbName)) { ioSystem.getRegister().deleteEntry(mMutationPbName); } if(ioSystem.getRegister().isRegistered(mMutationPbName)) { mMutationProba = castHandleT(ioSystem.getRegister()[mMutationPbName]); } else { mMutationProba = new Float(float(0.05)); string lLongDescrip = "Shrink mutation probability for an individual. "; lLongDescrip += "Shrink mutation consists in replacing a branch (a node with one "; lLongDescrip += "or more arguments) with one of his child node. This erases "; lLongDescrip += "the chosen node and the other child nodes."; Register::Description lProbaDescription( "Individual shrink mutation prob.", "Float", "0.05", lLongDescrip ); ioSystem.getRegister().addEntry(mMutationPbName, mMutationProba, lProbaDescription); } Beagle_StackTraceEndM("void GP::MutationShrinkOp::initialize(Beagle::System& ioSystem)"); } /*! * \brief Shrink mutate a GP individual. * \param ioIndividual GP individual to shrink mutate. * \param ioContext Context of the evolution. * \return True if the individual is effectively mutated, false if not. */ bool GP::MutationShrinkOp::mutate(Beagle::Individual& ioIndividual, Beagle::Context& ioContext) { Beagle_StackTraceBeginM(); GP::Individual& lIndividual = castObjectT(ioIndividual); GP::Context& lContext = castObjectT(ioContext); Beagle_LogDebugM( ioContext.getSystem().getLogger(), "mutation", "Beagle::GP::MutationShrinkOp", string("Individual before GP shrink mutation: ")+ lIndividual.serialize() ); unsigned int lChosenTree = lIndividual.chooseRandomTree(ioContext); Beagle_LogDetailedM( ioContext.getSystem().getLogger(), "mutation", "Beagle::GP::MutationShrinkOp", string("Applying shrink mutation to ")+uint2ordinal(lChosenTree+1)+string(" tree") ); GP::Tree::Handle lActualTree = lIndividual[lChosenTree]; if(lActualTree->size() < 2) { Beagle_LogDebugM( ioContext.getSystem().getLogger(), "mutation", "Beagle::GP::MutationShrinkOp", string("Shrink mutation failed because the chosen tree has a size less than two (hence it doesn't have any primitives with arguments).") ); return false; } GP::Tree::Handle lOldTreeHandle = lContext.getGenotypeHandle(); unsigned int lOldTreeIndex = lContext.getGenotypeIndex(); unsigned int lChosenNode = lIndividual.chooseRandomNodeWithArgs(lChosenTree, ioContext); lIndividual[lChosenTree] = castHandleT(lIndividual.getTypeAlloc()->allocate()); // Copy lActualTree's attributes into new tree lIndividual[lChosenTree]->setPrimitiveSetIndex(lActualTree->getPrimitiveSetIndex()); lIndividual[lChosenTree]->setNumberArguments(lActualTree->getNumberArguments()); lIndividual[lChosenTree]->clear(); lIndividual[lChosenTree]->insert(lIndividual[lChosenTree]->end(), lActualTree->begin(), lActualTree->begin()+lChosenNode); unsigned int lChosenArg = lContext.getSystem().getRandomizer().rollInteger(0, (*lActualTree)[lChosenNode].mPrimitive->getNumberArguments()-1); unsigned int lChosenArgIndex = lChosenNode + 1; for(unsigned int k=0; kinsert(lIndividual[lChosenTree]->end(), lActualTree->begin()+lChosenArgIndex, lActualTree->begin()+lChosenArgIndex+lChosenArgSubTreeSize); unsigned int lChosenNodeSubTreeSize = (*lActualTree)[lChosenNode].mSubTreeSize; lIndividual[lChosenTree]->insert(lIndividual[lChosenTree]->end(), lActualTree->begin()+lChosenNode+lChosenNodeSubTreeSize, lActualTree->end()); lActualTree->setContextToNode(lChosenNode, lContext); unsigned int lDiffSize = (*lActualTree)[lChosenNode].mSubTreeSize - (*lActualTree)[lChosenArgIndex].mSubTreeSize; for(unsigned int l=0; l<(lContext.getCallStackSize()-1); l++) { (*lIndividual[lChosenTree])[lContext.getCallStackElement(l)].mSubTreeSize -= lDiffSize; } Beagle_LogVerboseM( ioContext.getSystem().getLogger(), "mutation", "Beagle::GP::MutationShrinkOp", string("Replacing the ")+uint2ordinal(lChosenNode+1)+ string(" node of the ")+uint2ordinal(lChosenTree+1)+ string(" tree with its ")+uint2ordinal(lChosenArg+1)+ string(" argument, that is the ")+ uint2ordinal(lChosenArgIndex+1)+string(" node") ); lContext.setGenotypeHandle(lOldTreeHandle); lContext.setGenotypeIndex(lOldTreeIndex); Beagle_LogDebugM( ioContext.getSystem().getLogger(), "mutation", "Beagle::GP::MutationShrinkOp", string("Individual after GP shrink mutation: ")+ ioIndividual.serialize() ); return true; Beagle_StackTraceEndM("bool GP::MutationShrinkOp::mutate(Beagle::Individual& ioIndividual, Beagle::Context& ioContext)"); }