/* * Open BEAGLE * Copyright (C) 2001-2005 by Christian Gagne and Marc Parizeau * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public * License as published by the Free Software Foundation; either * version 2.1 of the License, or (at your option) any later version. * * This library is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with this library; if not, write to the Free Software * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA * * Contact: * Laboratoire de Vision et Systemes Numeriques * Departement de genie electrique et de genie informatique * Universite Laval, Quebec, Canada, G1K 7P4 * http://vision.gel.ulaval.ca * */ /*! * \file beagle/GP/src/MutationSwapSubtreeConstrainedOp.cpp * \brief Source code of class GP::MutationSwapSubtreeConstrainedOp. * \author Christian Gagne * \author Jianjun Hu * \author Marc Parizeau * $Revision: 1.7 $ * $Date: 2005/10/04 16:25:10 $ */ #include "beagle/GP.hpp" #include #include using namespace Beagle; /*! * \brief Construct a constrained GP swap subtree mutation operator. * \param inMutationPbName Mutation probability parameter name used in register. * \param inDistribPbName Swap mutation distribution probability parameter name. * \param inName Name of the operator. */ GP::MutationSwapSubtreeConstrainedOp::MutationSwapSubtreeConstrainedOp( Beagle::string inMutationPbName, Beagle::string inDistribPbName, Beagle::string inName) : MutationSwapSubtreeOp(inMutationPbName, inDistribPbName, inName) { } /*! * \brief Swap subtree mutate a constrained GP individual. * \param ioIndividual GP individual to swap subtree mutate. * \param ioContext Context of the evolution. */ bool GP::MutationSwapSubtreeConstrainedOp::mutate(Beagle::Individual& ioIndividual, Beagle::Context& ioContext) { Beagle_StackTraceBeginM(); // Initial parameters checks. Beagle_AssertM(ioIndividual.size() > 0); Beagle_ValidateParameterM(mNumberAttempts->getWrappedValue()>0, "gp.try", ">0"); // Cast method arguments. GP::Individual& lGPIndiv = castObjectT(ioIndividual); GP::Context& lContext1 = castObjectT(ioContext); GP::Context::Alloc& lContextAlloc = castObjectT(ioContext.getSystem().getContextAllocator()); GP::Context::Handle lContextHdl2 = castHandleT(lContextAlloc.clone(lContext1)); // Get parameters in local values, with the total number of nodes of the mutated individual. bool lMatingDone = false; float lDistrProba = mDistributionProba->getWrappedValue(); unsigned int lMaxTreeDepth = mMaxTreeDepth->getWrappedValue(); GP::Tree::Handle lOldTreeHandle1 = lContext1.getGenotypeHandle(); unsigned int lOldTreeIndex1 = lContext1.getGenotypeIndex(); unsigned int lSizeIndiv = 0; for(unsigned int i=0; isize(); // Some outputs. Beagle_LogDebugM( lContext1.getSystem().getLogger(), "mutation", "Beagle::GP::MutationSwapSubtreeConstrainedOp", string("Individual tried for constrained swap subtree mutation (before): ")+ lGPIndiv.serialize() ); // Mutation loop. Try the given number of attempts to mutation the individual. for(unsigned int lAttempt=0; lAttempt < mNumberAttempts->getWrappedValue(); lAttempt++) { // Choose a node of the individual to mutate. unsigned int lNode1 = lContext1.getSystem().getRandomizer().rollInteger(0, lGPIndiv.size()-1); // Get the tree in which the choosen node is. Change the global node index to the tree's index. unsigned int lChoosenTree = 0; for(; lChoosenTreesize()) break; Beagle_AssertM(lNode1 >= lGPIndiv[lChoosenTree]->size()); lNode1 -= lGPIndiv[lChoosenTree]->size(); } Beagle_AssertM(lChoosenTree < lGPIndiv.size()); // Cannot do anything with an tree of size <= 1. if(lGPIndiv[lChoosenTree]->size() <= 1) continue; // Some outputs. Beagle_LogVerboseM( lContext1.getSystem().getLogger(), "mutation", "Beagle::GP::MutationSwapSubtreeConstrainedOp", string("Trying a constrained swap subtree mutation of the ")+uint2ordinal(lChoosenTree+1)+ string(" tree") ); // Make two clones of the choosen tree. GP::Tree::Alloc& lTreeAlloc = castObjectT(*lGPIndiv.getTypeAlloc()); GP::Tree::Handle lTreeClone1 = castHandleT(lTreeAlloc.clone(*lGPIndiv[lChoosenTree])); GP::Tree::Handle lTreeClone2 = castHandleT(lTreeAlloc.clone(*lGPIndiv[lChoosenTree])); // Now we decide whether the swap subtree mutation is internal or external. bool lMutationType = lContext1.getSystem().getRandomizer().rollUniform(0.0, 1.0) < lDistrProba; // Cannot do an internal mutation when there is only one branch in the tree. if(lTreeClone1->size() == (*lTreeClone1)[0].mPrimitive->getNumberArguments()+1) lMutationType = false; // This is special case, a linear tree. Cannot do an external mutation. if(lTreeClone1->size() == (*lTreeClone1)[1].mSubTreeSize+1) { if(lTreeClone1->size()==2) continue; // Cannot do anything here with the tree. lMutationType = true; } // lMutationType is true -> internal mutation if(lMutationType) { // If the selected node is a terminal, or a branch with a subtree made only of terminals, // choose another node in the same tree. while((*lTreeClone1)[lNode1].mSubTreeSize == ((*lTreeClone1)[lNode1].mPrimitive->getNumberArguments()+1)) { lNode1 = lContext1.getSystem().getRandomizer().rollInteger(0, lTreeClone1->size()-1); } // Choosing the second node, a branch in lNode1's subtree. unsigned int lSubTreeSizeN1 = (*lTreeClone1)[lNode1].mSubTreeSize; unsigned int lN2OffN1 = lContext1.getSystem().getRandomizer().rollInteger(1, lSubTreeSizeN1-1); unsigned int lNode2 = lNode1 + lN2OffN1; while((*lTreeClone1)[lNode2].mPrimitive->getNumberArguments() == 0) { lN2OffN1 = lContext1.getSystem().getRandomizer().rollInteger(1, lSubTreeSizeN1-1); lNode2 = lNode1 + lN2OffN1; } // Choosing the third node, any node in lNode2's subtree. unsigned int lSubTreeSizeN2 = (*lTreeClone1)[lNode2].mSubTreeSize; unsigned int lN3OffN2 = lContext1.getSystem().getRandomizer().rollInteger(1, lSubTreeSizeN2-1); // Ok, now we can exchange the subtrees. // New value of lNode1 and lNode2 for the second exchange. unsigned int lNode3Exch2 = lNode1 + lN3OffN2; unsigned int lNode1Exch2 = lNode2; // New value of lNode1 and lNode2 for the third exchange. unsigned int lNode2Exch3 = lNode1 + lN3OffN2 + lN2OffN1; unsigned int lNode3Exch3 = lNode2; // First exchange. lTreeClone1->setContextToNode(lNode1, lContext1); lTreeClone2->setContextToNode(lNode2, *lContextHdl2); exchangeSubTrees(*lTreeClone1, lNode1, lContext1, *lTreeClone2, lNode2, *lContextHdl2); // Second exchange. lTreeClone1->setContextToNode(lNode3Exch2, lContext1); lTreeClone2->setContextToNode(lNode1Exch2, *lContextHdl2); exchangeSubTrees(*lTreeClone1, lNode3Exch2, lContext1, *lTreeClone2, lNode1Exch2, *lContextHdl2); // Third exchange. lTreeClone1->setContextToNode(lNode2Exch3, lContext1); lTreeClone2->setContextToNode(lNode3Exch3, *lContextHdl2); exchangeSubTrees(*lTreeClone1, lNode2Exch3, lContext1, *lTreeClone2, lNode3Exch3, *lContextHdl2); // Checking if the tree depth is respected. If not, start again. if(lTreeClone1->getTreeDepth() > lMaxTreeDepth) { Beagle_LogVerboseM( lContext1.getSystem().getLogger(), "mutation", "Beagle::GP::MutationSwapSubtreeConstrainedOp", "Tree maximum depth exceeded. Constrained GP swap subtree mutation invalid." ); continue; } // As we are using topologically contrained tree, valid the new tree. If it is not valid, // do a new mutation attempt. lContext1.setGenotypeHandle(lTreeClone1); lContext1.setGenotypeIndex(lChoosenTree); lTreeClone1->setContextToNode(lNode1, lContext1); if(lTreeClone1->validateSubTree(lNode1, lContext1)) { lGPIndiv[lChoosenTree] = lTreeClone1; Beagle_LogVerboseM( lContext1.getSystem().getLogger(), "mutation", "Beagle::GP::MutationSwapSubtreeConstrainedOp", "Constrained GP swap subtree mutation valid" ); lMatingDone = true; break; // The swap subtree mutation is valid. } else { Beagle_LogVerboseM( lContext1.getSystem().getLogger(), "mutation", "Beagle::GP::MutationSwapSubtreeConstrainedOp", "Constrained GP swap subtree mutation invalid" ); continue; } } // lMutationType is false -> external mutation else { // Deterniming the minimal node index to use. unsigned int lMinNodeIndex = 0; for(; lTreeClone1->size() == ((*lTreeClone1)[lMinNodeIndex].mSubTreeSize+lMinNodeIndex); ++lMinNodeIndex) { if(lMinNodeIndex == (lTreeClone1->size()-1)) continue; // Can't do anything with linear tree. } // Change lNode1 if less than minimum node index. if(lNode1 < lMinNodeIndex) lNode1 = lContext1.getSystem().getRandomizer().rollInteger(lMinNodeIndex, lTreeClone1->size()-1); // Choosing second swap subtree mutation point. std::vector< unsigned int,BEAGLE_STLALLOCATOR > lValidN2; for(unsigned int i=lMinNodeIndex; isize(); ++i) { if((i>=lNode1) && (i=i) && (lNode1<(i+(*lTreeClone1)[i].mSubTreeSize))) continue; else lValidN2.push_back(i); } unsigned int lNode2 = lValidN2[lContext1.getSystem().getRandomizer().rollInteger(0, lValidN2.size()-1)]; Beagle_LogVerboseM( lContext1.getSystem().getLogger(), "mutation", "Beagle::GP::MutationSwapSubtreeConstrainedOp", string("Trying an external constrained swap subtree mutation of the ")+ uint2ordinal(lNode1+1)+string(" node with the subtree to the ")+uint2ordinal(lNode2+1)+ string(" node") ); // Ok, now we can exchange the subtrees. // New value of lNode1 and lNode2 for the second exchange. unsigned int lNode1Exch2 = lNode1; unsigned int lNode2Exch2 = lNode2; if(lNode1 < lNode2) { lNode2Exch2 += (*lTreeClone1)[lNode2].mSubTreeSize; lNode2Exch2 -= (*lTreeClone1)[lNode1].mSubTreeSize; } else { lNode1Exch2 += (*lTreeClone1)[lNode1].mSubTreeSize; lNode1Exch2 -= (*lTreeClone1)[lNode2].mSubTreeSize; } // First exchange. lTreeClone1->setContextToNode(lNode1, lContext1); lTreeClone2->setContextToNode(lNode2, *lContextHdl2); exchangeSubTrees(*lTreeClone1, lNode1, lContext1, *lTreeClone2, lNode2, *lContextHdl2); // Second exchange lTreeClone1->setContextToNode(lNode2Exch2, lContext1); lTreeClone2->setContextToNode(lNode1Exch2, *lContextHdl2); exchangeSubTrees(*lTreeClone1, lNode2Exch2, lContext1, *lTreeClone2, lNode1Exch2, *lContextHdl2); // Checking if the tree depth is respected. If not, start again. if(lTreeClone1->getTreeDepth() > lMaxTreeDepth) { Beagle_LogVerboseM( lContext1.getSystem().getLogger(), "mutation", "Beagle::GP::MutationSwapSubtreeConstrainedOp", "Tree maximum depth exceeded. Constrained GP swap subtree mutation invalid." ); continue; } // As we are using topologically contrained tree, valid the new tree. If it is not valid, // do a new mutation attempt. lContext1.setGenotypeHandle(lTreeClone1); lContext1.setGenotypeIndex(lChoosenTree); lTreeClone1->setContextToNode(lNode1Exch2, lContext1); bool lNode1Valid = lTreeClone1->validateSubTree(lNode1Exch2,lContext1); lTreeClone1->setContextToNode(lNode2Exch2, lContext1); bool lNode2Valid = lTreeClone1->validateSubTree(lNode2Exch2,lContext1); if(lNode1Valid && lNode2Valid) { lGPIndiv[lChoosenTree] = lTreeClone1; Beagle_LogVerboseM( lContext1.getSystem().getLogger(), "mutation", "Beagle::GP::MutationSwapSubtreeConstrainedOp", "Constrained GP swap subtree mutation valid" ); lMatingDone = true; break; // The swap subtree mutation is valid. } else { Beagle_LogVerboseM( lContext1.getSystem().getLogger(), "mutation", "Beagle::GP::MutationSwapSubtreeConstrainedOp", "Constrained GP swap subtree mutation invalid" ); continue; } } } // Replace the contexts. lContext1.setGenotypeHandle(lOldTreeHandle1); lContext1.setGenotypeIndex(lOldTreeIndex1); if(lMatingDone) { Beagle_LogDebugM( lContext1.getSystem().getLogger(), "mutation", "Beagle::GP::MutationSwapSubtreeConstrainedOp", string("Individual after constrained swap subtree mutation: ")+ lGPIndiv.serialize() ); } else { Beagle_LogVerboseM( lContext1.getSystem().getLogger(), "mutation", "Beagle::GP::MutationSwapSubtreeConstrainedOp", "No constrained GP swap subtree mutation done" ); } return lMatingDone; Beagle_StackTraceEndM("bool GP::MutationSwapSubtreeConstrainedOp::mutate(Beagle::Individual& ioIndividual, Beagle::Context& ioContext)"); }