/* * Open BEAGLE * Copyright (C) 2001-2004 by Christian Gagne and Marc Parizeau * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public * License as published by the Free Software Foundation; either * version 2.1 of the License, or (at your option) any later version. * * This library is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with this library; if not, write to the Free Software * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA * * Contact: * Laboratoire de Vision et Systemes Numeriques * Departement de genie electrique et de genie informatique * Universite Laval, Quebec, Canada, G1V 4J7 * http://vision.gel.ulaval.ca * */ /*! * \file beagle/LinGP/src/MutationOp.cpp * \brief Source code of class LinGP::MutationOp. * \author Christian Gagne * \author Alain-Daniel Bourdage * $Revision: 1.1 $ * $Date: 2005/10/06 15:43:44 $ */ #include #include #include "beagle/GP.hpp" #include "beagle/LinGP/MutationOp.hpp" #include "beagle/LinGP/Program.hpp" #include "beagle/RunTimeException.hpp" #include "beagle/ValidationException.hpp" #include "beagle/LinGP/Context.hpp" using namespace Beagle; /*! * \brief Construct a linear GP mutation operator. * \param inMutationPbName Mutation probability parameter name used in register. * \param inInstructMutatePbName Instruction mutation probability parameter name used in register. * \param inName Name of the operator. */ LinGP::MutationOp::MutationOp(string inMutationPbName, string inInstructMutatePbName, string inName) : Beagle::MutationOp(inMutationPbName, inName), mInstructMutatePbName(inInstructMutatePbName) { } /*! * \brief Initialize the linear GP mutation operator. * \param ioSystem System of the evolution. */ void LinGP::MutationOp::initialize(Beagle::System& ioSystem) { Beagle::MutationOp::initialize(ioSystem); if(ioSystem.getRegister().isRegistered(mMutationPbName)) { ioSystem.getRegister().deleteEntry(mMutationPbName); } if(ioSystem.getRegister().isRegistered(mMutationPbName)) { mMutationProba = castHandleT(ioSystem.getRegister()[mMutationPbName]); } else { mMutationProba = new Float(float(1.0)); Register::Description lProbaDescription( "Individual linear GP mutation prob.", "Float", "1.0", "Linear GP mutation probability for each individual." ); ioSystem.getRegister().addEntry(mMutationPbName, mMutationProba, lProbaDescription); } if(ioSystem.getRegister().isRegistered(mInstructMutatePbName)) { mInstructMutateProba = castHandleT(ioSystem.getRegister()[mInstructMutatePbName]); } else { mInstructMutateProba = new Float(float(0.05)); Register::Description lDescription( "Instruction mutation probability", "Float", "0.05", "Probability for each instruction inverted by mutation, when an individual is mutated." ); ioSystem.getRegister().addEntry(mInstructMutatePbName, mInstructMutateProba, lDescription); } } /*! * \brief Mutate a linear GP individual. * \param ioIndividual Linear GP individual to mutate. * \param ioContext Context of the evolution. * \return True if the individual is effectively mutated, false if not. */ bool LinGP::MutationOp::mutate(Beagle::Individual& ioIndividual, Beagle::Context& ioContext) { Beagle_ValidateParameterM(mInstructMutateProba->getWrappedValue()>=0.0, mInstructMutatePbName, "<0"); bool lMutated = false; Beagle_LogVerboseM( ioContext.getSystem().getLogger(), "mutation", "Beagle::LinGP::MutationOp", string("Linear GP mutation probability is: ")+ dbl2str(mInstructMutateProba->getWrappedValue()) ); LinGP::Context& lLinGPContext = castObjectT(ioContext); LinGP::InstructionSuperSet& lInsSS = lLinGPContext.getSystem().getInstructionSuperSet(); for(unsigned int i=0; i(ioIndividual[i]); Beagle_LogVerboseM( ioContext.getSystem().getLogger(), "mutation", "Beagle::LinGP::MutationOp", string("Mutating the ")+uint2ordinal(i+1)+" program" ); Beagle_LogDebugM( ioContext.getSystem().getLogger(), "mutation", "Beagle::LinGP::MutationOp", string("The program before mutation: ")+lProgram->serialize() ); for(unsigned int j=0; jsize(); j++) { double lRolledPb = ioContext.getSystem().getRandomizer().rollUniform(); if(lRolledPb <= mInstructMutateProba->getWrappedValue()) { (*lProgram)[j] = lInsSS[i]->selectRandomInstruction(lLinGPContext.getSystem())->giveReference(lLinGPContext); lMutated = true; } } if(lMutated) { Beagle_LogVerboseM( ioContext.getSystem().getLogger(), "mutation", "Beagle::LinGP::MutationOp", string("The program has been mutated") ); Beagle_LogDebugM( ioContext.getSystem().getLogger(), "mutation", "Beagle::LinGP::MutationOp", string("The program after mutation: ")+lProgram->serialize() ); } else { Beagle_LogVerboseM( ioContext.getSystem().getLogger(), "mutation", "Beagle::LinGP::MutationOp", string("The program has not been mutated") ); } } return lMutated; } /*! * \brief Read a linear GP mutation operator from XML tree. * \param inNode XML node to use to read mutation operator. * \param inOpMap Operator map to use to read mutation operator. */ void LinGP::MutationOp::readWithMap(PACC::XML::ConstIterator inIter, OperatorMap& inOpMap) { if((inIter->getType() != PACC::XML::eData) || (inIter->getValue() != getName())) { std::ostringstream lOSS; lOSS << "tag <" << getName() << "> expected!" << std::flush; throw Beagle_IOExceptionNodeM(*inIter, lOSS.str()); } string lMutationPbReadName = inIter->getAttribute("mutationpb"); if(lMutationPbReadName.empty() == false) mMutationPbName = lMutationPbReadName; string lInstructMutatePbReadName = inIter->getAttribute("mutinstructpb"); if(lInstructMutatePbReadName.empty() == false) mInstructMutatePbName = lInstructMutatePbReadName; } /*! * \brief Write linear GP mutation operator into XML streamer. * \param ioStreamer XML streamer to write mutation operator into. * \param inIndent Whether XML output should be indented. */ void LinGP::MutationOp::writeContent(PACC::XML::Streamer& ioStreamer, bool inIndent) const { Beagle::MutationOp::writeContent(ioStreamer, inIndent); ioStreamer.insertAttribute("mutinstructpb", mInstructMutatePbName); }